Showing : swish • reset
0
votes
3
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279
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Interaction tests and paired interaction tests in swish
swish salmon fishpond
updated 12 weeks ago by 41k • written 12 weeks ago by • 0
4
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7
replies
1.0k
views
Fishpond/Swish Interaction Test Error
fishpond swish
10 months ago Miguel ▴ 20
0
votes
3
replies
660
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Fishpond with unbalanced dataset
rna-seq salmon fishpond swish
updated 10 months ago by 41k • written 10 months ago by • 0
0
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8
replies
1.3k
views
Swish log2FC NA output
swish fishpond DifferentialExpression
20 months ago jvandinter • 0
1
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3
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1.6k
views
miRNA differential expression analysis - treat as transcript level?
tximport DESeq2 edgeR swish miRNA
updated 22 months ago by 41k • written 22 months ago by • 0
5
votes
9
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1.5k
views
Questions regarding failing tximeta import for swish
swish fishpond GenomicFeatures tximeta
updated 20 months ago by 41k • written 2.0 years ago by • 0
0
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8
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1.4k
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swish in a blocking design?
fishpond swish
2.2 years ago • updated 2.1 years ago msll0802 • 0
1
vote
3
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1.4k
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Two Genotypes Four Treatments RNA-seq Analysis
salmon rna-seq swish bootstrap fishpond
updated 2.2 years ago by 41k • written 2.2 years ago by • 0
1
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1
reply
984
views
Swish with more than two conditions. Add support for contrasts?
tximeta DESeq2 swish fishpond
updated 2.2 years ago by 41k • written 2.2 years ago by ▴ 20
2
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2
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2.0k
views
Volcano plots of DEGs from Swish are weird
DESeq2 fishpond salmon swish
2.6 years ago Qin ▴ 10
0
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6
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1.4k
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Running swish on a non-reference transcript assembly / tximeta import issue
tximeta swish fishpond
updated 3.0 years ago by 41k • written 3.0 years ago by • 0
3
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5
replies
1.2k
views
Swish (fishpond) scaled counts result
Swish fishpond
3.2 years ago • updated 3.1 years ago 675743 ▴ 20
3
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6
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1.3k
views
Swish with covariate for batch effect
swish fishpond
3.5 years ago thomas.dugedebernonville • 0
3
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2
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860
views
the result of swish function from fishpond package
fishpond swish
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
14 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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