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swish
•
reset
2
votes
2
replies
2.8k
views
Volcano plots of DEGs from Swish are weird
DESeq2
fishpond
salmon
swish
3.4 years ago
Qin
▴ 10
1
vote
3
replies
2.5k
views
miRNA differential expression analysis - treat as transcript level?
tximport
DESeq2
edgeR
swish
miRNA
updated 2.6 years ago by
Michael Love
43k • written 2.7 years ago by
BG
• 0
5
votes
9
replies
2.0k
views
Questions regarding failing tximeta import for swish
swish
fishpond
GenomicFeatures
tximeta
updated 2.5 years ago by
Michael Love
43k • written 2.9 years ago by
jvandinter
• 0
1
vote
3
replies
1.8k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
samuelcjx
• 0
0
votes
8
replies
1.8k
views
swish in a blocking design?
fishpond
swish
3.0 years ago
msll0802
• 0
0
votes
6
replies
1.8k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta
swish
fishpond
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
Jack Riley
• 0
0
votes
8
replies
1.7k
views
Swish log2FC NA output
swish
fishpond
DifferentialExpression
2.5 years ago
jvandinter
• 0
3
votes
5
replies
1.7k
views
Swish (fishpond) scaled counts result
Swish
fishpond
4.0 years ago
675743
▴ 20
3
votes
6
replies
1.7k
views
Swish with covariate for batch effect
swish
fishpond
4.3 years ago
thomas.dugedebernonville
• 0
1
vote
1
reply
1.4k
views
Swish with more than two conditions. Add support for contrasts?
tximeta
DESeq2
swish
fishpond
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
jeremymsimon
▴ 20
4
votes
7
replies
1.4k
views
Fishpond/Swish Interaction Test Error
fishpond
swish
20 months ago
Miguel
▴ 20
3
votes
2
replies
1.1k
views
the result of swish function from fishpond package
fishpond
swish
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
1911449
• 0
0
votes
3
replies
962
views
Fishpond with unbalanced dataset
rna-seq
salmon
fishpond
swish
updated 20 months ago by
Michael Love
43k • written 20 months ago by
samuelcjx
• 0
0
votes
3
replies
673
views
Interaction tests and paired interaction tests in swish
swish
salmon
fishpond
updated 12 months ago by
Michael Love
43k • written 12 months ago by
Nicholas
• 0
14 results • Page
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