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6
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5
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biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl
symbol
hgnc
biomart
updated 3.0 years ago by
James W. MacDonald
59k • written 3.0 years ago by
foehn
▴ 80
5
votes
7
replies
748
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID
SYMBOL
AnnotationDbi
org.Hs.eg.db
updated 16 months ago by
Gordon Smyth
45k • written 16 months ago by
bastien_chassagnol
• 0
3
votes
3
replies
1.2k
views
Does AnnotationHub replaces AnnotationDbi for ID conversion (e.g. entrez, refseq, symbols)?
conversion
symbol
entrez
updated 6.7 years ago by
James W. MacDonald
59k • written 6.7 years ago by
dalloliogm
▴ 40
2
votes
1
reply
507
views
biomaRt fails to retrieve GO description for some particular gene
biomart
go
r
bioconductor
symbol
2.8 years ago
foehn
▴ 80
0
votes
0
replies
667
views
Using Pathview with gene.idtype = "SYMBOL"
Pathview
symbol
5.7 years ago
sofia.figueiredo
▴ 10
0
votes
1
reply
690
views
error in getsymbol function
symbol
updated 5.1 years ago by
Guido Hooiveld
★ 3.2k • written 5.1 years ago by
farahqureshi5
• 0
6 results • Page
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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! I got it now!
Comment: Reading multiple data segments from FCS 3.0 file
by
SamGG
▴ 270
You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…
Answer: how to make a group to apply the data to CAMERA
by
Gordon Smyth
45k
See the [limma User's Guide](https://www.bioconductor.org/packages/3.15/bioc/vignettes/limma/inst/doc/usersguide.pdf) for how to undertake …
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
To add to the extensive discussion above, you may also want to have a look at the so-called UPC algorithm, available in the [package][1] `S…
Answer: How to best visualize multi-level transcriptomics experiment data?
by
Gordon Smyth
45k
> One way is to extract the differentially expressed genes with p.val = 0.05 and logFC = +/-1.0 I strongly recommend using FDR < 0.05 and…
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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