Bioconductor Syntenet

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syntenet

updated 6 weeks ago by Fabricio Almeida-Silva ▴ 40 • written 12 weeks ago by Sujeevan • 0

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277

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syntenet

updated 6 weeks ago by Fabricio Almeida-Silva ▴ 40 • written 3 months ago by Sujeevan • 0

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syntenet doubletrouble

6 weeks ago hfyuan2016 • 0

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560

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syntenet microsynteny blocks synteny

written 9 months ago by Alexandros • 0

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601

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syntenet Bacteria synteny

updated 4 months ago by Fabricio Almeida-Silva ▴ 40 • written 6 months ago by kluongni • 0

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syntenet synteny Network

written 17 months ago by Alexandros • 0

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Network syntenet Clustering coefficient

9 months ago Alexandros • 0

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syntenet

updated 3 months ago by Sujeevan • 0 • written 15 months ago by lwanderson8c • 0

8 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0