Showing : syntenet • reset
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 6 weeks ago by ▴ 40 • written 12 weeks ago by • 0
0
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1
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272
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question about data processing for syntenet
syntenet
updated 6 weeks ago by ▴ 40 • written 3 months ago by • 0
0
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4
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255
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Error in classify_gene_pairs
syntenet doubletrouble
6 weeks ago hfyuan2016 • 0
0
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2
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559
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MIcrosynteny block information - Syntenet
syntenet microsynteny blocks synteny
written 9 months ago by • 0
0
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1
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596
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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 4 months ago by ▴ 40 • written 6 months ago by • 0
1
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10
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2.0k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 17 months ago by • 0
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3
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554
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
9 months ago Alexandros • 0
2
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8
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1.3k
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 3 months ago by • 0 • written 15 months ago by • 0
8 results • Page 1 of 1
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Comment: Different Shrunk Log2FC according with reference by Michael Love 41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Votes
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
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