Bioconductor Syntenet

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syntenet

updated 5 weeks ago by Fabricio Almeida-Silva ▴ 40 • written 11 weeks ago by Sujeevan • 0

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268

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syntenet

updated 5 weeks ago by Fabricio Almeida-Silva ▴ 40 • written 3 months ago by Sujeevan • 0

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syntenet doubletrouble

5 weeks ago hfyuan2016 • 0

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syntenet microsynteny blocks synteny

written 9 months ago by Alexandros • 0

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syntenet Bacteria synteny

updated 3 months ago by Fabricio Almeida-Silva ▴ 40 • written 5 months ago by kluongni • 0

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syntenet synteny Network

written 17 months ago by Alexandros • 0

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Network syntenet Clustering coefficient

9 months ago Alexandros • 0

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1.2k

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syntenet

updated 3 months ago by Sujeevan • 0 • written 15 months ago by lwanderson8c • 0

8 results • Page 1 of 1

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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k