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syntenet
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10
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Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 17 months ago by
Alexandros
• 0
2
votes
8
replies
1.2k
views
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 3 months ago by
Sujeevan
• 0 • written 15 months ago by
lwanderson8c
• 0
0
votes
1
reply
593
views
Syntenet application to bacterial genome and file processing
syntenet
Bacteria
synteny
updated 3 months ago by
Fabricio Almeida-Silva
▴ 40 • written 5 months ago by
kluongni
• 0
0
votes
2
replies
552
views
MIcrosynteny block information - Syntenet
syntenet
microsynteny
blocks
synteny
written 9 months ago by
Alexandros
• 0
0
votes
3
replies
547
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
9 months ago
Alexandros
• 0
0
votes
1
reply
268
views
question about data processing for syntenet
syntenet
updated 5 weeks ago by
Fabricio Almeida-Silva
▴ 40 • written 3 months ago by
Sujeevan
• 0
0
votes
4
replies
252
views
Error in classify_gene_pairs
syntenet
doubletrouble
5 weeks ago
hfyuan2016
• 0
0
votes
1
reply
238
views
Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 5 weeks ago by
Fabricio Almeida-Silva
▴ 40 • written 11 weeks ago by
Sujeevan
• 0
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
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deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
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I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
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russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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