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syntenet
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4
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214
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Error in classify_gene_pairs
syntenet
doubletrouble
17 days ago • updated 16 days ago
hfyuan2016
• 0
0
votes
1
reply
209
views
Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 16 days ago by
Fabricio Almeida-Silva
▴ 40 • written 8 weeks ago by
Sujeevan
• 0
0
votes
1
reply
235
views
question about data processing for syntenet
syntenet
updated 16 days ago by
Fabricio Almeida-Silva
▴ 40 • written 11 weeks ago by
Sujeevan
• 0
0
votes
1
reply
576
views
Syntenet application to bacterial genome and file processing
syntenet
Bacteria
synteny
updated 3 months ago by
Fabricio Almeida-Silva
▴ 40 • written 5 months ago by
kluongni
• 0
0
votes
2
replies
523
views
MIcrosynteny block information - Syntenet
syntenet
microsynteny
blocks
synteny
written 8 months ago by
Alexandros
• 0
0
votes
3
replies
518
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
8 months ago
Alexandros
• 0
2
votes
8
replies
1.2k
views
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 11 weeks ago by
Sujeevan
• 0 • written 15 months ago by
lwanderson8c
• 0
1
vote
10
replies
1.9k
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Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 16 months ago by
Alexandros
• 0
8 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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