updated 18 months ago by
Gordon Smyth
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written 18 months ago by
Endre Sebestyén
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Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
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0
Many thanks for your answer.
To clarify the last point, `R2_nox1` is the proportion of the deviance explained when considering `design.no…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
Rory Stark
★
4.4k
The latest version, `DiffBind_3.6.1`, contains fixes for these issues. You will get these fixes if you upgrade to `R_4.2.0` and `Bioconduct…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
•
0
Many thanks, that seems to work!
However, the estimates tend to be surprisingly high, for many genes R2 being close to 1 (quartiles being…
Answer: EnrichGO not working with db created from annotationhub
by
Lucía
•
0
I've gone through my code and I'm pretty sure the issue is not the code, but that some gene IDs (all the ones that start with LOC) are just…
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