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systempiper
•
reset
3
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2
replies
941
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How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.0 years ago
appropiate
• 0
0
votes
0
replies
475
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.1 years ago
appropiate
• 0
0
votes
1
reply
717
views
how to analysis chip-seq data
systemPipeR
updated 2.3 years ago by
dcassol
▴ 100 • written 2.3 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
2.9k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
tina
• 0
0
votes
0
replies
655
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.0 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.6k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.3 years ago
Deleted
▴ 70
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.5 years ago
rj.innet
• 0
0
votes
2
replies
1.1k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.6 years ago
rj.innet
• 0
0
votes
2
replies
655
views
systemARGS not found
systempiper
5.6 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.6k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
clarisbaby
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.5 years ago by
Thomas Girke
★ 1.7k • written 6.5 years ago by
tarun2
• 0
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.1 years ago
xuertowong
• 0
2
votes
3
replies
2.0k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.4 years ago by
Thomas Girke
★ 1.7k • written 7.4 years ago by
abass.conteh
• 0
1
vote
2
replies
1.9k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
3.6k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.8 years ago
musa
▴ 10
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
7.8 years ago
A Gossner
▴ 50
0
votes
2
replies
1.6k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.2 years ago by
Thomas Girke
★ 1.7k • written 8.2 years ago by
setarosd
• 0
0
votes
4
replies
1.5k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.4 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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