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systempiper
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reset
14
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10
replies
3.6k
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Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.3 years ago
Deleted
▴ 70
3
votes
2
replies
941
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.0 years ago
appropiate
• 0
2
votes
3
replies
2.0k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.4 years ago by
Thomas Girke
★ 1.7k • written 7.4 years ago by
abass.conteh
• 0
2
votes
2
replies
2.9k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
tina
• 0
1
vote
2
replies
1.9k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
alexandr.gopanenko
▴ 50
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.1 years ago
xuertowong
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.5 years ago by
Thomas Girke
★ 1.7k • written 6.5 years ago by
tarun2
• 0
0
votes
3
replies
1.6k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
clarisbaby
• 0
0
votes
2
replies
655
views
systemARGS not found
systempiper
5.6 years ago
kimberly.dickson
• 0
0
votes
2
replies
1.1k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.6 years ago
rj.innet
• 0
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.5 years ago
rj.innet
• 0
0
votes
2
replies
1.6k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.2 years ago by
Thomas Girke
★ 1.7k • written 8.2 years ago by
setarosd
• 0
0
votes
0
replies
655
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.0 years ago
Mr.RB
▴ 20
0
votes
4
replies
1.5k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.4 years ago
Ugo Borello
▴ 340
0
votes
1
reply
717
views
how to analysis chip-seq data
systemPipeR
updated 2.3 years ago by
dcassol
▴ 100 • written 2.3 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
475
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.1 years ago
appropiate
• 0
0
votes
7
replies
3.6k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.8 years ago
musa
▴ 10
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
7.8 years ago
A Gossner
▴ 50
18 results • Page
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Comment: fgsea fork
by
Sofa
• 0
Workshops and summer schools offer immersive learning experiences outside traditional academic settings, catering to diverse interests and …
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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