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Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of
by
Gregory
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0
Thanks for the prompt response, Gordon.
I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …
Comment: DiffBind handling of replicates and consensus
by
Rory Stark
★
5.0k
You may want to try different values for the `normalize` parameter:
dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles)
by
Rory Stark
★
5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles)
by
Dorien
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Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Comment: Suggested package missing from Development version of Bioconductor
by
shepherl
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Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…
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