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Showing :
tcgabiolinks
•
reset
2
votes
22
replies
4.2k
views
Error in 'colnames' while running case 1 of TCGABiolinks
tcgabiolinks
Error in `colnames
8.1 years ago
zeeniajagga
• 0
4
votes
20
replies
3.0k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 7.0 years ago by
Mike Smith
★ 6.5k • written 7.0 years ago by
tangming2005
▴ 190
0
votes
11
replies
3.1k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks
gdc
7.4 years ago
jshelton
• 0
6
votes
11
replies
2.9k
views
Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks
rnaseq
normalization
EDASeq
updated 6.3 years ago by
antonio.colaprico
▴ 50 • written 6.4 years ago by
svlachavas
▴ 830
5
votes
11
replies
3.8k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 4.7 years ago by
Marcel Ramos
690 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
2
votes
11
replies
3.6k
views
package or namespace load failed for TCGAbiolinks
tcgabiolinks
updated 6.5 years ago by
wenhuo hu
▴ 200 • written 6.6 years ago by
jason.yijialin
• 0
3
votes
8
replies
3.4k
views
error reading from connection (Error in load(url(con)))
TCGAbiolinks
3.0 years ago
xiaofeiwang18266
▴ 50
4
votes
8
replies
1.1k
views
TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
10 months ago • updated 9 months ago
Habil Zare
▴ 200
0
votes
8
replies
2.6k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
7.5 years ago
sabarinath.chandrasekharan
▴ 10
2
votes
8
replies
4.7k
views
GDCquery_Maf error
TCGAbiolinks
GDCquery_Maf
updated 20 months ago by
1526466763
• 0 • written 2.0 years ago by
e.iich
• 0
0
votes
7
replies
1.8k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 7.5 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.5 years ago by
tangming2005
▴ 190
3
votes
7
replies
4.2k
views
Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
tcgabiolinks
tcgadownload
updated 7.4 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.4 years ago by
Leonardo Collado Torres
★ 1.0k
6
votes
7
replies
2.5k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
5.8 years ago
atakanekiz
▴ 30
1
vote
7
replies
1.9k
views
Cannot retrieve projects from TCGA using getGDCprojects function
tcgabiolinks
TCGA
software error
6.3 years ago
jacorvar
▴ 40
0
votes
6
replies
3.0k
views
TCGAbiolinks DNA methylation analysis TCGAvisualize_meanMethylation
tcgabiolinks
updated 8.0 years ago by
Tiago C. Silva
▴ 270 • written 8.0 years ago by
maedakus
▴ 10
4
votes
6
replies
1.6k
views
TCGABiolinks downloaded data do not match GDC portal data
TCGAbiolinks
3.7 years ago
mario.zanfardino
▴ 160
1
vote
6
replies
1.3k
views
Error downloading TCGA miRNA expression data
tcgabiolinks
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
JYBH0
• 0
2
votes
6
replies
2.0k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga
tcgabiolinks
microarray
exons
oligonucleotide
updated 7.9 years ago by
Tiago C. Silva
▴ 270 • written 7.9 years ago by
Fernando
• 0
7
votes
6
replies
2.4k
views
Analysis using TCGAbiolinks
tcgabiolinks
triple negative breast cancer
data sets
updated 6.3 years ago by
antonio.colaprico
▴ 50 • written 6.3 years ago by
fawazfebin
▴ 60
1
vote
6
replies
2.0k
views
Errors in TCGAbiolinks
tcgabiolinks
updated 7.7 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.7 years ago by
sabarinath.chandrasekharan
▴ 10
2
votes
6
replies
3.2k
views
Getting a flat metadata table from the XML files in TCGA: is it feasible?
tcgabiolinks
updated 7.4 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.4 years ago by
Leonardo Collado Torres
★ 1.0k
3
votes
5
replies
2.0k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks
gdcdownload
unzip
updated 6.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 6.3 years ago by
fawazfebin
▴ 60
0
votes
5
replies
1.4k
views
TCGAbiolinks installation error because of R.oo installation error
TCGAbiolinks
R.oo
updated 2.2 years ago by
ersan
• 0 • written 3.7 years ago by
Talip Zengin
▴ 10
1
vote
5
replies
1.2k
views
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error
tcgabiolinks
updated 6.4 years ago by
eshelden
▴ 40 • written 6.4 years ago by
sechenmo
• 0
4
votes
5
replies
2.4k
views
GDCprepare - error
TCGABiolinks
GDCprepare
4.7 years ago
vm
▴ 30
2
votes
5
replies
3.5k
views
GDCdownload does not work
GDCdow
tcgabiolinks
error
tcgadownload
download_error
updated 5.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 5.3 years ago by
miki716
• 0
2
votes
5
replies
1.3k
views
TCGAbiolinksGUI is not stable on windows 7.
tcgabiolinks
tcgabiolinksgui
updated 5.6 years ago by
huangtao334334
▴ 10 • written 5.6 years ago by
ansari.sarabio
• 0
2
votes
5
replies
1.7k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 6.3 years ago by
Marcel Ramos
690 • written 6.3 years ago by
michaelwxf2012
• 0
0
votes
5
replies
1.9k
views
TCGA: to extract clinical data from barcode
cancer
TCGAbiolinks
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
Marie DENIS
▴ 10
2
votes
5
replies
1.5k
views
GDCprepare() can never complete request ("Error: cannot allocate vector")
TCGAbiolinks
TCGA
updated 23 months ago by
biologsr
• 0 • written 3.5 years ago by
aush
▴ 40
0
votes
5
replies
2.6k
views
Retrieve TCGA expression data for a single gene
TCGA
TCGAbiolinks
updated 3.6 years ago by
Tiago Chedraoui Silva
▴ 260 • written 3.6 years ago by
aush
▴ 40
0
votes
4
replies
2.2k
views
TCGA biolinks data download
tcgabiolinks
updated 7.7 years ago by
Tiago C. Silva
▴ 270 • written 7.7 years ago by
maedakus
▴ 10
2
votes
4
replies
1.0k
views
Error : Results must have the same dimensions
TCGAbiolinks
GDC dataset
4.3 years ago
ph.shimaasherif
• 0
5
votes
4
replies
2.8k
views
HTSeq Counts no longer available
TCGAbiolinks
updated 22 months ago by
swbarnes2
★ 1.3k • written 24 months ago by
vm
▴ 30
2
votes
4
replies
1.3k
views
Missing clinical data at TCGAbiolinks data
TCGAbiolinks
days_to_death
clinical data
missing column
updated 4.9 years ago by
Tiago Chedraoui Silva
▴ 260 • written 5.0 years ago by
Talip Zengin
▴ 10
0
votes
4
replies
222
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 6 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 6 weeks ago by
tirordep
• 0
0
votes
4
replies
1.6k
views
TCGABiolinks not available for R3.3.0
TCGA
tcgabiolinks
R
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
j.ritchie
• 0
0
votes
4
replies
1.4k
views
how to reformat complex list object (derived with TCGAbiolinks)?
TCGA
tcgabiolinks
list
reformat
6.2 years ago
Guido Hooiveld
★ 3.9k
3
votes
4
replies
2.3k
views
TCGA biolinks - Samples with multiple profiles
tcgabiolinks
tcga
genomicdatacommon
5.6 years ago
franceschini.gianmarco
• 0
0
votes
4
replies
1.1k
views
problem for downloading TCGA data by TCGAbiolikns package
TCGAbiolinks
TCGA
GDC
4.3 years ago
modarzi
▴ 10
0
votes
4
replies
929
views
GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
updated 5 weeks ago by
Marcel Ramos
690 • written 23 months ago by
Emre
• 0
3
votes
3
replies
1.3k
views
Retrieve accurate tumor stage data with TCGAbiolinks
tcgabiolinks
tcga
5.9 years ago
Benjamin Ostendorf
▴ 90
1
vote
3
replies
2.5k
views
Data download via TCGAbiolinks
tcgabiolinks
updated 6.9 years ago by
ugandhar.ch1
• 0 • written 8.2 years ago by
maedakus
▴ 10
0
votes
3
replies
4.2k
views
Problem in downloading data via TCGAbiolinks
tcgabiolinks
tcgadownload
updated 2.8 years ago by
H. Z. Amini
▴ 10 • written 7.7 years ago by
sabarinath.chandrasekharan
▴ 10
1
vote
3
replies
5.6k
views
package ‘TCGAbiolinks’ is not available (for R version 3.2.0)
software error
TCGAbiolinks
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
yizhong2md
• 0
0
votes
3
replies
1.3k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
6.9 years ago
ugandhar.ch1
• 0
1
vote
3
replies
4.2k
views
"Permission denied" when installing TCGAbiolinks and RTCGAToolbox
installation
permission denied
RTCGAToolbox
TCGAbiolinks
3.9 years ago
julia.tutzauer
• 0
0
votes
3
replies
1.3k
views
TCGAbiolinks Genome_Wide_SNP_6 data analysis
tcgabiolinks
updated 8.0 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.0 years ago by
maedakus
▴ 10
0
votes
3
replies
1.9k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
7.1 years ago
tangming2005
▴ 190
0
votes
3
replies
2.0k
views
TCGAbiolinks data download error
tcgabiolinks
8.0 years ago
maedakus
▴ 10
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