Showing : tcgabiolinks • reset
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
6 weeks ago • updated 4 weeks ago Giovanni Calice ▴ 160
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 4 weeks ago by ▴ 20 • written 6.5 years ago by ▴ 100
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206
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TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks TCGA clinical TCGA-BRCA
written 5 weeks ago by • 0
1
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142
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Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data
7 weeks ago BioinfoMug • 0
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4
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GDCdownload Directory Problem :(
TCGAWorkflowData TCGAbiolinks
updated 8 weeks ago by 690 • written 23 months ago by • 0
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138
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GDC slides download
TCGAbiolinks
8 weeks ago jain72744 • 0
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4
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255
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I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by • 0
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138
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champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
11 weeks ago Thalita • 0
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1
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369
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Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
5 months ago leon • 0
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1
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599
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How to identify the batch informations from the sample ID?
TCGAbiolinks BatchQC BatchEffect
updated 8 months ago by • 0 • written 13 months ago by ▴ 20
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238
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Where/how are TCGAbiolinks colData column names sourced from?
clinical TCGAbiolinks
9 months ago BioInfoBeginnerrr • 0
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8
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1.1k
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TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
11 months ago • updated 10 months ago Habil Zare ▴ 200
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2
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RPPA data (Proteomics analysis)
TCGAbiolinks limma
12 months ago • updated 11 months ago qiz218591 • 0
13 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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