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tcgabiolinks
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4
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8
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1.1k
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TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
11 months ago • updated 10 months ago
Habil Zare
▴ 200
1
vote
0
replies
143
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k
MethylationArray
TCGAbiolinks
Tcga
TCGAbiolinksGUI.data
7 weeks ago
BioinfoMug
• 0
1
vote
3
replies
3.0k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 4 weeks ago by
snijesh
▴ 20 • written 6.5 years ago by
Ramiro Magno
▴ 100
0
votes
0
replies
138
views
GDC slides download
TCGAbiolinks
8 weeks ago
jain72744
• 0
0
votes
4
replies
255
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 9 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 9 weeks ago by
tirordep
• 0
0
votes
1
reply
206
views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks
TCGA
clinical
TCGA-BRCA
written 5 weeks ago by
BioinfoMug
• 0
0
votes
1
reply
370
views
Problems when running GDC_prepare in R
TCGAbiolinks
error
GDC_prepare
5 months ago
leon
• 0
0
votes
2
replies
833
views
RPPA data (Proteomics analysis)
TCGAbiolinks
limma
12 months ago • updated 11 months ago
qiz218591
• 0
0
votes
1
reply
600
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 8 months ago by
wrab425
• 0 • written 13 months ago by
snijesh
▴ 20
0
votes
0
replies
238
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical
TCGAbiolinks
9 months ago
BioInfoBeginnerrr
• 0
0
votes
0
replies
132
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
6 weeks ago • updated 4 weeks ago
Giovanni Calice
▴ 160
0
votes
0
replies
138
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
11 weeks ago
Thalita
• 0
0
votes
4
replies
960
views
GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
updated 8 weeks ago by
Marcel Ramos
690 • written 23 months ago by
Emre
• 0
13 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards
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Peter Hickey
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sropri
• 0
Popular Question
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W. Evan Johnson
▴ 850
Popular Question
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Alejandro Reyes
★ 1.9k
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shepherl
3.8k
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