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GDCdow tcgabiolinks error tcgadownload download_error

updated 5.3 years ago by Tiago Chedraoui Silva ▴ 260 • written 5.3 years ago by miki716 • 0

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tcgadownload deseq2 mirna normalization

updated 5.8 years ago by Lorena Pantano ▴ 120 • written 5.8 years ago by Björn • 0

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tcgabiolinks tcgadownload

updated 7.5 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.5 years ago by Leonardo Collado Torres ★ 1.0k

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tcgabiolinks TCGAdownload

updated 7.8 years ago by Tiago C. Silva ▴ 270 • written 7.8 years ago by roladali ▴ 20

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.2 years ago by enigmargs • 0

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tcgabiolinks tcgadownload

updated 2.9 years ago by H. Z. Amini ▴ 10 • written 7.8 years ago by sabarinath.chandrasekharan ▴ 10

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R tcgabiolinks tcgadownload error

6.9 years ago juniuskcc • 0

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tcgadownload

7.8 years ago maedakus ▴ 10

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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