Bioconductor Tfbstools

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error TFBSTools R

3.1 years ago HELEN • 0

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tfbstools jaspar

updated 9.1 years ago by Ge Tan ▴ 20 • written 9.2 years ago by JasonLouisStein • 0

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bioconductor tfbstools

updated 8.1 years ago by Ge Tan ▴ 20 • written 8.1 years ago by laurabuggiotti • 0

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TFBSTools looping PFMatrixList PFMatrix bioconductor

7.6 years ago nathan.lawlor03 • 0

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pwm tfbstools jaspar

updated 7.2 years ago by Ge Tan ▴ 20 • written 7.2 years ago by chrisclarkson100 ▴ 50

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TFBSTools R forloop

updated 3.1 years ago by onlineclasshelpnow • 0 • written 3.1 years ago by HELEN • 0

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tfbstools

updated 9.5 years ago by Ge Tan ▴ 20 • written 9.7 years ago by franceskrussell • 0

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.1 years ago by James W. MacDonald 67k • written 3.1 years ago by HELEN • 0

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TFBSTools FASTA RStudio

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TFBSTools RStudio R

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10 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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