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tfbstools
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Error in TFBSTools at SitesetList
error
TFBSTools
R
2.4 years ago
HELEN
• 0
0
votes
1
reply
1.3k
views
TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools
jaspar
updated 8.5 years ago by
Ge Tan
▴ 20 • written 8.5 years ago by
JasonLouisStein
• 0
0
votes
1
reply
1.0k
views
Errore: subscript contains NAs - when running searchPairBSgenome in TFBTools
bioconductor
tfbstools
updated 7.4 years ago by
Ge Tan
▴ 20 • written 7.4 years ago by
laurabuggiotti
• 0
1
vote
1
reply
1.7k
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TFBSTools: Appending objects to PFMatrixList
TFBSTools
looping
PFMatrixList
PFMatrix
bioconductor
6.9 years ago
nathan.lawlor03
• 0
2
votes
1
reply
2.2k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.5 years ago by
Ge Tan
▴ 20 • written 6.5 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
641
views
write a for loop for searching TF with TFBSTools
TFBSTools
R
forloop
updated 2.4 years ago by
onlineclasshelpnow
• 0 • written 2.4 years ago by
HELEN
• 0
0
votes
1
reply
1.3k
views
TFBSTools pvalues function hangs on certain inputs
tfbstools
updated 8.8 years ago by
Ge Tan
▴ 20 • written 9.0 years ago by
franceskrussell
• 0
0
votes
1
reply
724
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 2.4 years ago by
James W. MacDonald
65k • written 2.4 years ago by
HELEN
• 0
0
votes
0
replies
607
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.4 years ago
HELEN
• 0
0
votes
0
replies
602
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
2.4 years ago
HELEN
• 0
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Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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