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tfbstools
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815
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Error in TFBSTools at SitesetList
error
TFBSTools
R
2.5 years ago
HELEN
• 0
0
votes
1
reply
1.3k
views
TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools
jaspar
updated 8.5 years ago by
Ge Tan
▴ 20 • written 8.6 years ago by
JasonLouisStein
• 0
0
votes
1
reply
1.1k
views
Errore: subscript contains NAs - when running searchPairBSgenome in TFBTools
bioconductor
tfbstools
updated 7.5 years ago by
Ge Tan
▴ 20 • written 7.5 years ago by
laurabuggiotti
• 0
1
vote
1
reply
1.8k
views
TFBSTools: Appending objects to PFMatrixList
TFBSTools
looping
PFMatrixList
PFMatrix
bioconductor
7.0 years ago
nathan.lawlor03
• 0
2
votes
1
reply
2.3k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.6 years ago by
Ge Tan
▴ 20 • written 6.6 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
664
views
write a for loop for searching TF with TFBSTools
TFBSTools
R
forloop
updated 2.5 years ago by
onlineclasshelpnow
• 0 • written 2.5 years ago by
HELEN
• 0
0
votes
1
reply
1.4k
views
TFBSTools pvalues function hangs on certain inputs
tfbstools
updated 8.9 years ago by
Ge Tan
▴ 20 • written 9.1 years ago by
franceskrussell
• 0
0
votes
1
reply
754
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
HELEN
• 0
0
votes
0
replies
629
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
0
votes
0
replies
617
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
2.5 years ago
HELEN
• 0
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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