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Soft-threshold in WGCNA
wgcna
network
bicor
threshold
updated 3.6 years ago by
Peter Langfelder
★ 2.9k • written 3.6 years ago by
ag1805x
▴ 80
0
votes
1
reply
983
views
Copy ratio threshold for calling actual CNV
PureCN
copy-ratio
threshold
updated 5.5 years ago by
markus.riester
▴ 130 • written 5.5 years ago by
twtoal
▴ 10
1
vote
1
reply
1.7k
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WGCNA - Choosing the best threshold
wgcna
sft
picksoftthreshold
threshold
rnaseq
updated 6.2 years ago by
Peter Langfelder
★ 2.9k • written 6.2 years ago by
Fabricio Almeida-Silva
▴ 40
0
votes
1
reply
1.1k
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SPIA plotP giving error
SPIA
plotP
threshold
7.4 years ago
docpriya21
• 0
4 results • Page
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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