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Showing :
tilingarray
•
reset
0
votes
0
replies
836
views
Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor
affy
tilingarray
7.4 years ago
jmtepp
• 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.8 years ago
bruce.moran
▴ 30
0
votes
0
replies
868
views
undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray
tilingArray
11.8 years ago
Du, Yang
▴ 10
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.5 years ago by
Tobias Straub
▴ 430 • written 14.5 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
770
views
tilingArray: error message in function segment()
tilingArray
tilingArray
15.1 years ago
Hui Tang
▴ 20
0
votes
0
replies
796
views
tilingArray problems
Normalization
GO
tilingArray
Normalization
GO
tilingArray
15.4 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
894
views
TilingArray Normalization
Transcription
Normalization
probe
tilingArray
Transcription
Normalization
probe
tilingArray
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Anjan Purkayastha
▴ 90
0
votes
0
replies
802
views
tilingArray problems
tilingArray
tilingArray
15.5 years ago
Anjan Purkayastha
▴ 90
0
votes
4
replies
1.1k
views
applicability of tilingArray package
Normalization
Yeast
affy
tilingArray
Normalization
Yeast
affy
tilingArray
updated 15.5 years ago by
Wolfgang Huber
★ 13k • written 15.5 years ago by
Michael Palumbo
▴ 50
0
votes
4
replies
1.1k
views
tilingArray- normalizeByReference
probe
tilingArray
probe
tilingArray
15.5 years ago
Anjan Purkayastha
▴ 90
0
votes
1
reply
991
views
combining data from two R arrays
GO
Survival
annotate
genefilter
vsn
tilingArray
GO
Survival
annotate
genefilter
vsn
16.6 years ago
Richard Harrison
▴ 70
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.6 years ago by
J-C. Marioni
▴ 40 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
5
replies
1.1k
views
Stuck with Yeast Tiling Array
tilingArray
tilingArray
updated 16.6 years ago by
Joern Toedling
▴ 730 • written 16.6 years ago by
Richard Harrison
▴ 70
0
votes
1
reply
808
views
Normalization in davidTiling demo
Normalization
GO
Survival
Biobase
genefilter
geneplotter
affy
vsn
PROcess
tilingArray
GO
updated 17.1 years ago by
Wolfgang Huber
★ 13k • written 17.1 years ago by
Julian Gehring
★ 1.3k
0
votes
1
reply
959
views
Normalization in davidTiling demo
Normalization
GO
Survival
genefilter
geneplotter
affy
vsn
tilingArray
affyio
GO
Survival
updated 17.2 years ago by
Wolfgang Huber
★ 13k • written 17.2 years ago by
Julian Gehring
★ 1.3k
0
votes
1
reply
987
views
Scripts to handle array CGH data files from NimbleGen
CGH
tilingArray
CGH
tilingArray
updated 17.7 years ago by
ma3mls@bath.ac.uk
▴ 40 • written 17.7 years ago by
Todd Richmond
▴ 140
0
votes
2
replies
2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer
Breast
PROcess
tilingArray
snapCGH
Cancer
Breast
PROcess
tilingArray
snapCGH
updated 17.7 years ago by
Wolfgang Huber
★ 13k • written 17.7 years ago by
Steven McKinney
▴ 310
0
votes
1
reply
887
views
tiling/SNP microarrays
SNP
Coverage
tilingArray
SNP
Coverage
tilingArray
updated 17.8 years ago by
Sean Davis
21k • written 17.8 years ago by
Jeffrey Blanchard
▴ 10
20 results • Page
1 of 1
Recent ...
Replies
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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