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tilingarray
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reset
0
votes
1
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1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.7 years ago
bruce.moran
▴ 30
0
votes
1
reply
871
views
tiling/SNP microarrays
SNP
Coverage
tilingArray
SNP
Coverage
tilingArray
updated 17.7 years ago by
Sean Davis
21k • written 17.7 years ago by
Jeffrey Blanchard
▴ 10
0
votes
2
replies
2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer
Breast
PROcess
tilingArray
snapCGH
Cancer
Breast
PROcess
tilingArray
snapCGH
updated 17.6 years ago by
Wolfgang Huber
★ 13k • written 17.6 years ago by
Steven McKinney
▴ 310
0
votes
1
reply
973
views
Scripts to handle array CGH data files from NimbleGen
CGH
tilingArray
CGH
tilingArray
updated 17.6 years ago by
ma3mls@bath.ac.uk
▴ 40 • written 17.6 years ago by
Todd Richmond
▴ 140
0
votes
1
reply
942
views
Normalization in davidTiling demo
Normalization
GO
Survival
genefilter
geneplotter
affy
vsn
tilingArray
affyio
GO
Survival
updated 17.1 years ago by
Wolfgang Huber
★ 13k • written 17.1 years ago by
Julian Gehring
★ 1.3k
0
votes
1
reply
776
views
Normalization in davidTiling demo
Normalization
GO
Survival
Biobase
genefilter
geneplotter
affy
vsn
PROcess
tilingArray
GO
updated 17.1 years ago by
Wolfgang Huber
★ 13k • written 17.1 years ago by
Julian Gehring
★ 1.3k
0
votes
5
replies
1.1k
views
Stuck with Yeast Tiling Array
tilingArray
tilingArray
updated 16.5 years ago by
Joern Toedling
▴ 730 • written 16.5 years ago by
Richard Harrison
▴ 70
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.5 years ago by
J-C. Marioni
▴ 40 • written 16.5 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.5 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.5 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
1
reply
979
views
combining data from two R arrays
GO
Survival
annotate
genefilter
vsn
tilingArray
GO
Survival
annotate
genefilter
vsn
16.5 years ago
Richard Harrison
▴ 70
0
votes
4
replies
1.1k
views
tilingArray- normalizeByReference
probe
tilingArray
probe
tilingArray
15.4 years ago
Anjan Purkayastha
▴ 90
0
votes
4
replies
1.1k
views
applicability of tilingArray package
Normalization
Yeast
affy
tilingArray
Normalization
Yeast
affy
tilingArray
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Michael Palumbo
▴ 50
0
votes
1
reply
876
views
TilingArray Normalization
Transcription
Normalization
probe
tilingArray
Transcription
Normalization
probe
tilingArray
updated 15.3 years ago by
Wolfgang Huber
★ 13k • written 15.3 years ago by
Anjan Purkayastha
▴ 90
0
votes
0
replies
788
views
tilingArray problems
tilingArray
tilingArray
15.4 years ago
Anjan Purkayastha
▴ 90
0
votes
0
replies
784
views
tilingArray problems
Normalization
GO
tilingArray
Normalization
GO
tilingArray
15.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
762
views
tilingArray: error message in function segment()
tilingArray
tilingArray
15.0 years ago
Hui Tang
▴ 20
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.4 years ago by
Tobias Straub
▴ 430 • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
0
replies
854
views
undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray
tilingArray
11.7 years ago
Du, Yang
▴ 10
0
votes
0
replies
823
views
Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor
affy
tilingarray
7.3 years ago
jmtepp
• 0
20 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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