Showing : tilingarray • reset
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tilingArray- normalizeByReference
probe tilingArray probe tilingArray
15.5 years ago Anjan Purkayastha ▴ 90
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 17.7 years ago by ★ 13k • written 17.7 years ago by ▴ 310
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.1 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
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5
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Stuck with Yeast Tiling Array
tilingArray tilingArray
updated 16.6 years ago by ▴ 730 • written 16.6 years ago by ▴ 70
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4
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views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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991
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
16.6 years ago Richard Harrison ▴ 70
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4
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1.1k
views
applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 50
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TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 90
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1
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.8 years ago bruce.moran ▴ 30
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1
reply
888
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tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 17.8 years ago by 21k • written 17.8 years ago by ▴ 10
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.7 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
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1
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1.2k
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 410
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1
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1.6k
views
tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
13.6 years ago Noah Dowell ▴ 410
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tilingArray: error message in function segment()
tilingArray tilingArray
15.1 years ago Hui Tang ▴ 20
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undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray tilingArray
11.8 years ago Du, Yang ▴ 10
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Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor affy tilingarray
7.4 years ago jmtepp • 0
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tilingArray problems
tilingArray tilingArray
15.5 years ago Anjan Purkayastha ▴ 90
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tilingArray problems
Normalization GO tilingArray Normalization GO tilingArray
15.4 years ago Wolfgang Huber ★ 13k
20 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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