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tilingarray
•
reset
0
votes
0
replies
836
views
Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor
affy
tilingarray
7.4 years ago
jmtepp
• 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.8 years ago
bruce.moran
▴ 30
0
votes
0
replies
868
views
undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray
tilingArray
11.8 years ago
Du, Yang
▴ 10
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.5 years ago by
Tobias Straub
▴ 430 • written 14.5 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
770
views
tilingArray: error message in function segment()
tilingArray
tilingArray
15.1 years ago
Hui Tang
▴ 20
0
votes
0
replies
796
views
tilingArray problems
Normalization
GO
tilingArray
Normalization
GO
tilingArray
15.4 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
894
views
TilingArray Normalization
Transcription
Normalization
probe
tilingArray
Transcription
Normalization
probe
tilingArray
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Anjan Purkayastha
▴ 90
0
votes
0
replies
801
views
tilingArray problems
tilingArray
tilingArray
15.5 years ago
Anjan Purkayastha
▴ 90
0
votes
4
replies
1.1k
views
applicability of tilingArray package
Normalization
Yeast
affy
tilingArray
Normalization
Yeast
affy
tilingArray
updated 15.5 years ago by
Wolfgang Huber
★ 13k • written 15.5 years ago by
Michael Palumbo
▴ 50
0
votes
4
replies
1.1k
views
tilingArray- normalizeByReference
probe
tilingArray
probe
tilingArray
15.5 years ago
Anjan Purkayastha
▴ 90
0
votes
1
reply
991
views
combining data from two R arrays
GO
Survival
annotate
genefilter
vsn
tilingArray
GO
Survival
annotate
genefilter
vsn
16.6 years ago
Richard Harrison
▴ 70
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.6 years ago by
J-C. Marioni
▴ 40 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
5
replies
1.1k
views
Stuck with Yeast Tiling Array
tilingArray
tilingArray
updated 16.6 years ago by
Joern Toedling
▴ 730 • written 16.6 years ago by
Richard Harrison
▴ 70
0
votes
1
reply
807
views
Normalization in davidTiling demo
Normalization
GO
Survival
Biobase
genefilter
geneplotter
affy
vsn
PROcess
tilingArray
GO
updated 17.1 years ago by
Wolfgang Huber
★ 13k • written 17.1 years ago by
Julian Gehring
★ 1.3k
0
votes
1
reply
959
views
Normalization in davidTiling demo
Normalization
GO
Survival
genefilter
geneplotter
affy
vsn
tilingArray
affyio
GO
Survival
updated 17.2 years ago by
Wolfgang Huber
★ 13k • written 17.2 years ago by
Julian Gehring
★ 1.3k
0
votes
1
reply
987
views
Scripts to handle array CGH data files from NimbleGen
CGH
tilingArray
CGH
tilingArray
updated 17.7 years ago by
ma3mls@bath.ac.uk
▴ 40 • written 17.7 years ago by
Todd Richmond
▴ 140
0
votes
2
replies
2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer
Breast
PROcess
tilingArray
snapCGH
Cancer
Breast
PROcess
tilingArray
snapCGH
updated 17.7 years ago by
Wolfgang Huber
★ 13k • written 17.7 years ago by
Steven McKinney
▴ 310
0
votes
1
reply
886
views
tiling/SNP microarrays
SNP
Coverage
tilingArray
SNP
Coverage
tilingArray
updated 17.8 years ago by
Sean Davis
21k • written 17.8 years ago by
Jeffrey Blanchard
▴ 10
20 results • Page
1 of 1
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Replies
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Votes
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
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