Biostar Time-course

Showing : time-course • reset

votes

replies

1.6k

views

limma multiple time points time-course differential expression

updated 4.8 years ago by Aaron Lun ★ 27k • written 4.8 years ago by Jake • 0

vote

replies

1.0k

views

deseq2 time-course

updated 4.0 years ago by Michael Love 37k • written 4.0 years ago by rbenel ▴ 20

vote

replies

1.5k

views

rnaseq deseq2 time-course

updated 4.9 years ago by Gavin Kelly ▴ 640 • written 4.9 years ago by inzirio ▴ 10

vote

replies

414

views

deseq2 Time-course

updated 3.2 years ago by Michael Love 37k • written 3.2 years ago by h.valipour.k • 0

vote

replies

304

views

deseq2 time-serie time-course fold-change

updated 2.2 years ago by swbarnes2 ★ 1.1k • written 2.2 years ago by Victor Chano • 0

votes

252

views

microarray normalization tscR time-course

updated 23 months ago by Kevin Blighe 3.6k • written 23 months ago by keremwai • 0

votes

335

views

deseq2 design time-course

updated 3.0 years ago by Michael Love 37k • written 3.0 years ago by Victor Chano • 0

votes

replies

538

views

masigpro covariates limma differential expression time-course

4.8 years ago veersingh.marwah • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Wow, I give you a full solution **including** explanation of basics and why the error you see even come up, and you still complain. Are the…

Comment: Error while running DESeq2 by ATpoint ★ 1.3k

You don't need stringtie unless you want to assemble a transcriptome. Just use featureCounts to make your count matrix. It will do fine.

Comment: Error while running DESeq2 by srikar • 0

Thank you . I will look into it, and upon running sum(countData<0), out of 231780 elements, 231642 of those are below 0. I think it may be …

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?

Comment: Error while running DESeq2 by Basti ▴ 330

Your error might stem from stringie then, unfortunately I do not use it and I think you would have a better answer by opening a github issu…

Votes

A: How to handle the change in resultsNames() for DESeq2 ?

C: How to handle the change in resultsNames() for DESeq2 ?

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i

Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i

Awards • All