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time-course
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2
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8
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1.9k
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Limma for differential expression in a time-course
limma
multiple time points
time-course
differential expression
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
Jake
• 0
1
vote
3
replies
1.6k
views
[DESeq2] time-course Experimental design
rnaseq
deseq2
time-course
updated 5.5 years ago by
Gavin Kelly
▴ 660 • written 5.5 years ago by
inzirio
▴ 10
1
vote
7
replies
1.3k
views
Visualization for Time Course "LRT" test in DESeq2
deseq2
time-course
updated 4.6 years ago by
Michael Love
39k • written 4.6 years ago by
rbenel
▴ 20
1
vote
3
replies
650
views
Three-factor design with DESeq2
deseq2
Time-course
updated 3.8 years ago by
Michael Love
39k • written 3.8 years ago by
h.valipour.k
• 0
0
votes
0
replies
607
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
5.3 years ago
veersingh.marwah
• 0
1
vote
2
replies
426
views
Time-series analysis with control and treated samples, and Fold Change extraction in DESeq2
deseq2
time-serie
time-course
fold-change
updated 2.8 years ago by
swbarnes2
★ 1.2k • written 2.8 years ago by
Victor Chano
• 0
0
votes
1
reply
417
views
DESeq2 analysis of multifactorial RNAseq experiment
deseq2
design
time-course
updated 3.6 years ago by
Michael Love
39k • written 3.6 years ago by
Victor Chano
• 0
0
votes
1
reply
340
views
Input of tscR
microarray
normalization
tscR
time-course
updated 2.5 years ago by
Kevin Blighe
3.7k • written 2.5 years ago by
keremwai
• 0
8 results • Page
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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