Biostar Time-course

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1.9k

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limma multiple time points time-course differential expression

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Jake • 0

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1.6k

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rnaseq deseq2 time-course

updated 5.5 years ago by Gavin Kelly ▴ 660 • written 5.5 years ago by inzirio ▴ 10

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1.3k

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deseq2 time-course

updated 4.6 years ago by Michael Love 39k • written 4.6 years ago by rbenel ▴ 20

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650

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deseq2 Time-course

updated 3.8 years ago by Michael Love 39k • written 3.8 years ago by h.valipour.k • 0

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607

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masigpro covariates limma differential expression time-course

5.3 years ago veersingh.marwah • 0

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426

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deseq2 time-serie time-course fold-change

updated 2.8 years ago by swbarnes2 ★ 1.2k • written 2.8 years ago by Victor Chano • 0

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417

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deseq2 design time-course

updated 3.6 years ago by Michael Love 39k • written 3.6 years ago by Victor Chano • 0

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340

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microarray normalization tscR time-course

updated 2.5 years ago by Kevin Blighe 3.7k • written 2.5 years ago by keremwai • 0

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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…

Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

How many plants are used for each of the biological replicate samples? One plant or a few?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…

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DESeq2 pairwise comparisons w/ 3 factors

A: DESeq2 pairwise comparisons w/ 3 factors

Comment: MA plot

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