Biostar Time-course

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rnaseq deseq2 time-course

updated 4.8 years ago by Gavin Kelly ▴ 630 • written 4.8 years ago by inzirio ▴ 10

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1.6k

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limma multiple time points time-course differential expression

updated 4.7 years ago by Aaron Lun ★ 27k • written 4.7 years ago by Jake • 0

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961

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deseq2 time-course

updated 3.9 years ago by Michael Love 37k • written 3.9 years ago by rbenel ▴ 20

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383

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deseq2 Time-course

updated 3.1 years ago by Michael Love 37k • written 3.1 years ago by h.valipour.k • 0

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324

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deseq2 design time-course

updated 2.9 years ago by Michael Love 37k • written 2.9 years ago by Victor Chano • 0

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285

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deseq2 time-serie time-course fold-change

updated 2.1 years ago by swbarnes2 ★ 1.0k • written 2.1 years ago by Victor Chano • 0

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239

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microarray normalization tscR time-course

updated 22 months ago by Kevin Blighe 3.5k • written 22 months ago by keremwai • 0

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masigpro covariates limma differential expression time-course

4.7 years ago veersingh.marwah • 0

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Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

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Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k