Bioconductor Time-course

Showing : time-course • reset

votes

576

views

microarray normalization tscR time-course

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by keremwai • 0

vote

replies

798

views

deseq2 time-serie time-course fold-change

updated 4.0 years ago by swbarnes2 ★ 1.3k • written 4.0 years ago by Victor Chano • 0

votes

634

views

deseq2 design time-course

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by Victor Chano • 0

votes

replies

1.4k

views

deseq2 Time-course

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by h.valipour.k • 0

vote

replies

2.0k

views

deseq2 time-course

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by rbenel ▴ 40

votes

replies

932

views

masigpro covariates limma differential expression time-course

6.6 years ago veersingh.marwah • 0

votes

replies

2.4k

views

limma multiple time points time-course differential expression

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Jake • 0

vote

replies

2.0k

views

rnaseq deseq2 time-course

updated 6.8 years ago by Gavin Kelly ▴ 680 • written 6.8 years ago by inzirio ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Awards • All

Scholar to ATpoint ★ 4.0k