Bioconductor Time-course

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votes

442

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microarray normalization tscR time-course

updated 3.2 years ago by Kevin Blighe 3.8k • written 3.2 years ago by keremwai • 0

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591

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deseq2 time-serie time-course fold-change

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by Victor Chano • 0

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532

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deseq2 design time-course

updated 4.3 years ago by Michael Love 40k • written 4.3 years ago by Victor Chano • 0

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1.1k

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deseq2 Time-course

updated 4.4 years ago by Michael Love 40k • written 4.4 years ago by h.valipour.k • 0

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1.7k

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deseq2 time-course

updated 5.3 years ago by Michael Love 40k • written 5.3 years ago by rbenel ▴ 30

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replies

762

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masigpro covariates limma differential expression time-course

6.0 years ago veersingh.marwah • 0

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2.1k

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limma multiple time points time-course differential expression

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Jake • 0

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1.8k

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rnaseq deseq2 time-course

updated 6.2 years ago by Gavin Kelly ▴ 670 • written 6.2 years ago by inzirio ▴ 10

8 results • Page 1 of 1

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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