Bioconductor Time-course

Showing : time-course • reset

votes

replies

2.6k

views

limma multiple time points time-course differential expression

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Jake • 0

vote

replies

2.4k

views

deseq2 time-course

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by rbenel ▴ 40

vote

replies

2.2k

views

rnaseq deseq2 time-course

updated 7.2 years ago by Gavin Kelly ▴ 690 • written 7.2 years ago by inzirio ▴ 10

votes

replies

1.6k

views

deseq2 Time-course

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by h.valipour.k • 0

vote

replies

928

views

deseq2 time-serie time-course fold-change

updated 4.5 years ago by swbarnes2 ★ 1.4k • written 4.5 years ago by Victor Chano • 0

votes

672

views

microarray normalization tscR time-course

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by keremwai • 0

votes

719

views

deseq2 design time-course

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by Victor Chano • 0

votes

replies

1.0k

views

masigpro covariates limma differential expression time-course

7.0 years ago veersingh.marwah • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…

Comment: miRTarRnaseq library by María Calvo • 0

Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…

Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

Votes

GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Awards • All

Scholar to ATpoint ★ 4.5k