Bioconductor Time-course

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limma multiple time points time-course differential expression

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by Jake • 0

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deseq2 time-course

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by rbenel ▴ 40

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rnaseq deseq2 time-course

updated 7.6 years ago by Gavin Kelly ▴ 690 • written 7.6 years ago by inzirio ▴ 10

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deseq2 Time-course

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by h.valipour.k • 0

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deseq2 time-serie time-course fold-change

updated 4.9 years ago by swbarnes2 ★ 1.4k • written 4.9 years ago by Victor Chano • 0

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731

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microarray normalization tscR time-course

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by keremwai • 0

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791

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deseq2 design time-course

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Victor Chano • 0

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masigpro covariates limma differential expression time-course

7.5 years ago veersingh.marwah • 0

8 results • Page 1 of 1

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Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

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Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

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Popular Question to xiaofeiwang198266 • 0

Scholar to shepherl 4.1k

Popular Question to James W. MacDonald 68k