Bioconductor Time-course

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limma multiple time points time-course differential expression

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Jake • 0

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deseq2 time-course

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by rbenel ▴ 40

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rnaseq deseq2 time-course

updated 7.8 years ago by Gavin Kelly ▴ 690 • written 7.8 years ago by inzirio ▴ 10

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deseq2 Time-course

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by h.valipour.k • 0

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masigpro covariates limma differential expression time-course

7.6 years ago veersingh.marwah • 0

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deseq2 time-serie time-course fold-change

updated 5.0 years ago by swbarnes2 ★ 1.4k • written 5.0 years ago by Victor Chano • 0

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811

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deseq2 design time-course

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by Victor Chano • 0

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754

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microarray normalization tscR time-course

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by keremwai • 0

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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k