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time-course
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Limma for differential expression in a time-course
limma
multiple time points
time-course
differential expression
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
Jake
• 0
1
vote
7
replies
2.9k
views
Visualization for Time Course "LRT" test in DESeq2
deseq2
time-course
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
rbenel
▴ 40
1
vote
3
replies
2.5k
views
[DESeq2] time-course Experimental design
rnaseq
deseq2
time-course
updated 7.8 years ago by
Gavin Kelly
▴ 690 • written 7.8 years ago by
inzirio
▴ 10
2
votes
3
replies
1.9k
views
Three-factor design with DESeq2
deseq2
Time-course
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
h.valipour.k
• 0
0
votes
0
replies
1.2k
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
7.6 years ago
veersingh.marwah
• 0
1
vote
2
replies
1.1k
views
Time-series analysis with control and treated samples, and Fold Change extraction in DESeq2
deseq2
time-serie
time-course
fold-change
updated 5.0 years ago by
swbarnes2
★ 1.4k • written 5.0 years ago by
Victor Chano
• 0
0
votes
1
reply
811
views
DESeq2 analysis of multifactorial RNAseq experiment
deseq2
design
time-course
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
Victor Chano
• 0
0
votes
1
reply
754
views
Input of tscR
microarray
normalization
tscR
time-course
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
keremwai
• 0
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Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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