Bioconductor Time-course

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3.6k

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limma multiple time points time-course differential expression

updated 8.5 years ago by Aaron Lun ★ 29k • written 8.5 years ago by Jake • 0

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3.4k

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deseq2 time-course

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by rbenel ▴ 50

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2.7k

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rnaseq deseq2 time-course

updated 8.6 years ago by Gavin Kelly ▴ 690 • written 8.6 years ago by inzirio ▴ 10

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2.3k

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deseq2 Time-course

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by h.valipour.k • 0

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1.4k

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masigpro covariates limma differential expression time-course

8.4 years ago veersingh.marwah • 0

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1.3k

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deseq2 time-serie time-course fold-change

updated 5.9 years ago by swbarnes2 ★ 1.4k • written 5.9 years ago by Victor Chano • 0

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951

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deseq2 design time-course

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by Victor Chano • 0

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936

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microarray normalization tscR time-course

updated 5.6 years ago by Kevin Blighe ★ 4.0k • written 5.6 years ago by keremwai • 0

8 results • Page 1 of 1

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Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Votes

Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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