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time-series
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1
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Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Debebe
• 0
0
votes
1
reply
609
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 17 months ago by
Michael Love
41k • written 17 months ago by
arshad1292
• 0
0
votes
2
replies
777
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
23 months ago
soda
▴ 80
0
votes
1
reply
814
views
DEseq2 to test half-life for time-series data
half-life
DESeq2
time-series
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
Xianjun Dong
▴ 10
0
votes
5
replies
1.8k
views
RNA-seq time course analysis with only one experimental condition
deseq2
cancer
rna-seq
time-series
4.8 years ago
mah19
• 0
2
votes
10
replies
2.8k
views
Time-series analysis with DESeq2
deseq2
time-series
design matrix
edger
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.0k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
bahlv
• 0
1
vote
4
replies
1.3k
views
Analysis Time course data using DESeq2
deseq2
timecourse
multiple time points
time-series
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
zhangfei-123
• 0
1
vote
5
replies
1.5k
views
Time course DE analysis in DESeq2 with Wald test
DESeq2
time-series
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
gtechbio
▴ 10
9 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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