Bioconductor Time-series

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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607

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 17 months ago by arshad1292 • 0

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772

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time-series mfuzz replace=FALSE

23 months ago soda ▴ 80

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814

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half-life DESeq2 time-series

updated 3.0 years ago by Michael Love 41k • written 3.0 years ago by Xianjun Dong ▴ 10

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1.8k

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deseq2 cancer rna-seq time-series

4.8 years ago mah19 • 0

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2.8k

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deseq2 time-series design matrix edger

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.0k

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deseq2 time-series without replicate

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by bahlv • 0

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1.3k

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deseq2 timecourse multiple time points time-series

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by zhangfei-123 • 0

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1.5k

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DESeq2 time-series

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by gtechbio ▴ 10

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

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Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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