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135

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DESeq2 timecourse DifferentialExpression

updated 14 days ago by James W. MacDonald 65k • written 14 days ago by joshua.mannheimer • 0

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231

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DESeq2 timecourse time

updated 3 months ago by Michael Love 41k • written 3 months ago by Anastasiia • 0

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250

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RNASeq DESeq2 timecourse

3 months ago WS • 0

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2.6k

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limma edger timecourse without replicate voom

written 7.4 years ago by Camila Orellana ▴ 10

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868

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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482

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timecoursedata RNASeqData TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by georgii.vdovin • 0

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1.3k

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Transcriptomics TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by smac97 • 0

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548

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timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 10 months ago by Fred • 0

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1.4k

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deseq2 timecourse design and contrast matrix

updated 6 weeks ago by ta_awwad ▴ 10 • written 8.5 years ago by Assa Yeroslaviz ★ 1.5k

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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