Bioconductor Timecourse

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130

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DESeq2 timecourse DifferentialExpression

updated 13 days ago by James W. MacDonald 65k • written 13 days ago by joshua.mannheimer • 0

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1.4k

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deseq2 timecourse design and contrast matrix

updated 6 weeks ago by ta_awwad ▴ 10 • written 8.5 years ago by Assa Yeroslaviz ★ 1.5k

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229

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DESeq2 timecourse time

updated 12 weeks ago by Michael Love 41k • written 3 months ago by Anastasiia • 0

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248

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RNASeq DESeq2 timecourse

3 months ago WS • 0

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2.6k

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limma edger timecourse without replicate voom

written 7.4 years ago by Camila Orellana ▴ 10

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864

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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1.3k

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Transcriptomics TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by smac97 • 0

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480

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timecoursedata RNASeqData TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by georgii.vdovin • 0

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546

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timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 10 months ago by Fred • 0

9 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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