Bioconductor Timecoursedata

Showing : timecoursedata • reset

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1.4k

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limma proteomics TMTlabeling timecoursedata

updated 3.5 years ago by SamGG ▴ 350 • written 3.5 years ago by maleknias • 0

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608

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 17 months ago by arshad1292 • 0

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474

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timecoursedata edgeR

updated 13 months ago by Gordon Smyth 50k • written 13 months ago by boczniak767 ▴ 720

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629

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DESeq2 timecoursedata replicates

updated 13 months ago by Michael Love 41k • written 14 months ago by fepesanz8 • 0

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1.3k

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timecoursedata limma

7 months ago • updated 4 months ago triZZla • 0

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882

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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485

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timecoursedata RNASeqData TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by georgii.vdovin • 0

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950

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QTL fourier TimeSeriesExperiment timecoursedata

3.0 years ago Daphne • 0

8 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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