Bioconductor Timecoursedata

Showing : timecoursedata • reset

votes

replies

741

views

DESeq2 timecoursedata GeneExpression

updated 6 months ago by ATpoint ★ 4.6k • written 6 months ago by pangtaihin • 0

votes

replies

489

views

DESeq2 ImpulseDE2 timecour timecoursedata moanin

7 months ago Aurora • 0

votes

replies

1.7k

views

timecoursedata limma

15 months ago • updated 12 months ago triZZla • 0

vote

replies

2.0k

views

time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 15 months ago by ATpoint ★ 4.6k • written 15 months ago by Debebe • 0

votes

872

views

RNASeqData TimeCourse DESeq2 timecoursedata

updated 5 months ago by Michael Love 43k • written 17 months ago by georgii.vdovin • 0

votes

replies

599

views

timecoursedata edgeR

updated 20 months ago by Gordon Smyth 52k • written 20 months ago by boczniak767 ▴ 740

votes

replies

835

views

DESeq2 timecoursedata replicates

updated 21 months ago by Michael Love 43k • written 21 months ago by fepesanz8 • 0

votes

792

views

DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.0 years ago by Michael Love 43k • written 2.1 years ago by arshad1292 • 0

votes

replies

1.2k

views

QTL fourier TimeSeriesExperiment timecoursedata

3.6 years ago Daphne • 0

votes

replies

1.6k

views

limma proteomics TMTlabeling timecoursedata

updated 4.1 years ago by SamGG ▴ 360 • written 4.1 years ago by maleknias • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All