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timecoursedata
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Timely differentially expressed genes
timecoursedata
limma
7 months ago • updated 4 months ago
triZZla
• 0
1
vote
6
replies
863
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Debebe
• 0
0
votes
1
reply
480
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DESeq2, Timecourse using fitted splines
timecoursedata
RNASeqData
TimeCourse
DESeq2
updated 9 months ago by
Michael Love
41k • written 9 months ago by
georgii.vdovin
• 0
0
votes
0
replies
471
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Plot profiles for each group - spline analysis in edgeR
timecoursedata
edgeR
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
boczniak767
▴ 720
0
votes
2
replies
624
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DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 13 months ago by
Michael Love
41k • written 13 months ago by
fepesanz8
• 0
0
votes
1
reply
602
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 16 months ago by
Michael Love
41k • written 17 months ago by
arshad1292
• 0
0
votes
0
replies
944
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Job:
Biostatistics Research Associate, York, UK
QTL
fourier
TimeSeriesExperiment
timecoursedata
3.0 years ago
Daphne
• 0
0
votes
3
replies
1.4k
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Find DEPs among TMT labeling proteom time course data by limma
limma
proteomics
TMTlabeling
timecoursedata
updated 3.4 years ago by
SamGG
▴ 350 • written 3.5 years ago by
maleknias
• 0
8 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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