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timecoursedata
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Timely differentially expressed genes
timecoursedata
limma
6 months ago • updated 4 months ago
triZZla
• 0
1
vote
6
replies
803
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Debebe
• 0
0
votes
3
replies
1.4k
views
Find DEPs among TMT labeling proteom time course data by limma
limma
proteomics
TMTlabeling
timecoursedata
updated 3.4 years ago by
SamGG
▴ 330 • written 3.4 years ago by
maleknias
• 0
0
votes
2
replies
606
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 13 months ago by
Michael Love
41k • written 13 months ago by
fepesanz8
• 0
0
votes
1
reply
445
views
DESeq2, Timecourse using fitted splines
timecoursedata
RNASeqData
TimeCourse
DESeq2
updated 8 months ago by
Michael Love
41k • written 8 months ago by
georgii.vdovin
• 0
0
votes
1
reply
588
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 16 months ago by
Michael Love
41k • written 17 months ago by
arshad1292
• 0
0
votes
0
replies
924
views
Job:
Biostatistics Research Associate, York, UK
QTL
fourier
TimeSeriesExperiment
timecoursedata
3.0 years ago
Daphne
• 0
0
votes
0
replies
457
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata
edgeR
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
boczniak767
▴ 720
8 results • Page
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Comment: fgsea fork
by
Sofa
• 0
Workshops and summer schools offer immersive learning experiences outside traditional academic settings, catering to diverse interests and …
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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