Bioconductor Timecoursedata

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timecoursedata limma

7 months ago • updated 4 months ago triZZla • 0

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863

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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479

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timecoursedata RNASeqData TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by georgii.vdovin • 0

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471

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timecoursedata edgeR

updated 13 months ago by Gordon Smyth 50k • written 13 months ago by boczniak767 ▴ 720

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623

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DESeq2 timecoursedata replicates

updated 13 months ago by Michael Love 41k • written 13 months ago by fepesanz8 • 0

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601

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 16 months ago by Michael Love 41k • written 17 months ago by arshad1292 • 0

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944

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QTL fourier TimeSeriesExperiment timecoursedata

3.0 years ago Daphne • 0

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1.4k

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limma proteomics TMTlabeling timecoursedata

updated 3.4 years ago by SamGG ▴ 350 • written 3.5 years ago by maleknias • 0

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740