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Comment: Bioconductor tool for curating annotations?
by
Lluís Revilla Sancho
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700
I think you can find those transcripts not overlapping with a GRanges object easily via ?GenomicRanges::setdiff, but I don't know how to an…
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
by
drknwk
•
0
Exact same problem here suddenly. Hope someone will have a fix soon!
Comment: SpliceWiz collateData error
by
a.wong
▴
10
Another common pitfall is using hg38 reference to analyse BAM files aligned to hg19.
Comment: SpliceWiz collateData error
by
a.wong
▴
10
It is difficult to be sure that matrix is all zeros, as the first and last block of values are IR (IR-ratio based introns) and RI (retained…
Comment: Advice for the analysis of microarray data with limma
by
Sam
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0
@gordonsmyth Do you have any references for this method? I'd be interested in learning more about this topic. I appreciate any help you can…
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