Showing : tkWidgets • reset
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Recent changes to Bioconductor packages
MultiChannel tkWidgets affy Rgraphviz MultiChannel tkWidgets affy Rgraphviz
21.2 years ago • updated 21.1 years ago madman@jimmy.harvard.edu ▴ 850
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Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
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5
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getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
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7
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A question
cdf tkWidgets cdf tkWidgets
updated 22.0 years ago by ▴ 150 • written 22.0 years ago by ▴ 20
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3
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1.2k
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Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
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4
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Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
21.3 years ago Tapan Mehta ▴ 270
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3
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trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
20.2 years ago Jeffrey Chang ▴ 40
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2
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Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
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2
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Trouble with affy version 1.2.1
Normalization rhdf5 tkWidgets affy Normalization rhdf5 tkWidgets affy
21.7 years ago Isaac Neuhaus ▴ 360
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12
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1.9k
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Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
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8
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Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 100
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objNameToList() on some particular list of objects in parent frame
tkWidgets xml kegggraph
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer tkWidgets widgetTools Cancer tkWidgets widgetTools
updated 17.6 years ago by ▴ 150 • written 17.6 years ago by ★ 2.9k
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1
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1.6k
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Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
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1
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782
views
Cannot load widgetTools package
Biobase tkWidgets reposTools Biobase tkWidgets reposTools
updated 21.1 years ago by 6.7k • written 21.1 years ago by ▴ 10
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5
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Error message when trying to ReadAffy with widgets function: help, please?_Part 2
Cancer tkWidgets Cancer tkWidgets
updated 20.9 years ago by ▴ 360 • written 20.9 years ago by ★ 2.9k
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Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
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Biobase load failed
Biobase genefilter tkWidgets Biobase genefilter tkWidgets
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 10
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1
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1.1k
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Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 300
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1
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paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
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1
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1.2k
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tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 30
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1
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982
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 7.4k
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1.6k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
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2
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ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 140
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2
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Problem with tkWidgets
tkWidgets tkWidgets
updated 12.6 years ago by 65k • written 12.6 years ago by ★ 13k
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2
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
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where to get R 1.9.0
tkWidgets affy tkWidgets affy
updated 20.1 years ago by ★ 5.5k • written 20.1 years ago by ▴ 210
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1
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problems with affy & widgets
Pharmacogenomics tkWidgets affy Pharmacogenomics tkWidgets affy
19.3 years ago Edoardo Saccenti ▴ 130
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1
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793
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GOstats/tkWidgets/gcrma conflict
tkWidgets gcrma matchprobes GOstats tkWidgets gcrma matchprobes GOstats
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 80
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906
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ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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3
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widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.2 years ago by ★ 2.9k • written 18.2 years ago by ▴ 80
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Re: trouble installing "affy" package
Cancer Biobase tkWidgets affy Cancer Biobase tkWidgets affy
20.2 years ago Wolfgang Huber ★ 13k
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0
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid tkWidgets graph GOstats Ruuid tkWidgets graph GOstats
16.8 years ago Michael Parisi ▴ 10
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0
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batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
19.4 years ago Marion Hakanson ▴ 50
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peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
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0
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affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
20.4 years ago juliab@stat.berkeley.edu ▴ 10
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0
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835
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Re: Bioconductor Digest, Vol 2, Issue 32
cdf Biobase tkWidgets affy GENE.E cdf Biobase tkWidgets affy GENE.E
21.0 years ago Michael McDonald ▴ 30
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0
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902
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tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.0 years ago grischa tödt ▴ 30
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0
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998
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
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0
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589
views
Re: memory problem with Affy
tkWidgets tkWidgets
21.2 years ago Sylvia Merk ▴ 50
41 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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