Showing : tkWidgets • reset
0
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8
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3.2k
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Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 100
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1
reply
3.1k
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
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2
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2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
0
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3
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2.3k
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trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
20.2 years ago Jeffrey Chang ▴ 40
0
votes
12
replies
1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
0
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9
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1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
0
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7
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1.7k
views
A question
cdf tkWidgets cdf tkWidgets
updated 22.0 years ago by ▴ 150 • written 22.0 years ago by ▴ 20
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1
reply
1.6k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.8 years ago by ▴ 50 • written 21.8 years ago by ▴ 460
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5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
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0
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1.5k
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peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.3k
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer tkWidgets widgetTools Cancer tkWidgets widgetTools
updated 17.6 years ago by ▴ 150 • written 17.6 years ago by ★ 2.9k
0
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3
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1.3k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.2 years ago by ★ 2.9k • written 18.2 years ago by ▴ 80
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5
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1.3k
views
Error message when trying to ReadAffy with widgets function: help, please?_Part 2
Cancer tkWidgets Cancer tkWidgets
updated 20.9 years ago by ▴ 360 • written 20.9 years ago by ★ 2.9k
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votes
2
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1.3k
views
ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 140
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votes
3
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1.2k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.0 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
0
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1.2k
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affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
20.4 years ago juliab@stat.berkeley.edu ▴ 10
0
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4
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1.2k
views
Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
21.2 years ago Tapan Mehta ▴ 270
0
votes
2
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1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.1 years ago by 6.7k • written 21.1 years ago by ▴ 20
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1
reply
1.2k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 30
0
votes
2
replies
1.1k
views
Trouble with affy version 1.2.1
Normalization rhdf5 tkWidgets affy Normalization rhdf5 tkWidgets affy
21.6 years ago Isaac Neuhaus ▴ 360
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
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1
reply
1.1k
views
paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
0
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1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 300
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2
replies
1.1k
views
Problem with tkWidgets
tkWidgets tkWidgets
updated 12.5 years ago by 65k • written 12.5 years ago by ★ 13k
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4
replies
1.0k
views
Recent changes to Bioconductor packages
MultiChannel tkWidgets affy Rgraphviz MultiChannel tkWidgets affy Rgraphviz
21.1 years ago madman@jimmy.harvard.edu ▴ 850
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1
reply
1.0k
views
Biobase load failed
Biobase genefilter tkWidgets Biobase genefilter tkWidgets
updated 20.5 years ago by 6.7k • written 20.5 years ago by ▴ 10
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0
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1.0k
views
batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
19.3 years ago Marion Hakanson ▴ 50
0
votes
1
reply
1.0k
views
problems with affy & widgets
Pharmacogenomics tkWidgets affy Pharmacogenomics tkWidgets affy
19.3 years ago Edoardo Saccenti ▴ 130
0
votes
1
reply
1.0k
views
where to get R 1.9.0
tkWidgets affy tkWidgets affy
updated 20.1 years ago by ★ 5.5k • written 20.1 years ago by ▴ 210
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votes
0
replies
995
views
Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
977
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 7.4k
0
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0
replies
907
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid tkWidgets graph GOstats Ruuid tkWidgets graph GOstats
16.8 years ago Michael Parisi ▴ 10
0
votes
1
reply
901
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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votes
0
replies
896
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
16.9 years ago grischa tödt ▴ 30
0
votes
1
reply
892
views
objNameToList() on some particular list of objects in parent frame
tkWidgets xml kegggraph
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
0
votes
0
replies
830
views
Re: Bioconductor Digest, Vol 2, Issue 32
cdf Biobase tkWidgets affy GENE.E cdf Biobase tkWidgets affy GENE.E
21.0 years ago Michael McDonald ▴ 30
0
votes
0
replies
826
views
Re: trouble installing "affy" package
Cancer Biobase tkWidgets affy Cancer Biobase tkWidgets affy
20.2 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
790
views
GOstats/tkWidgets/gcrma conflict
tkWidgets gcrma matchprobes GOstats tkWidgets gcrma matchprobes GOstats
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 80
0
votes
1
reply
777
views
Cannot load widgetTools package
Biobase tkWidgets reposTools Biobase tkWidgets reposTools
updated 21.1 years ago by 6.7k • written 21.1 years ago by ▴ 10
0
votes
0
replies
586
views
Re: memory problem with Affy
tkWidgets tkWidgets
21.1 years ago Sylvia Merk ▴ 50
41 results • Page 1 of 1
Recent ...
Replies
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks again for your answer, I will try to play a little bit with the parameters. Only one thing, my data are actually CpG methylation :)…
Comment: flowStats Search Error by tholmes • 0
Thank you so much!
Comment: what is the sampleFiles by James W. MacDonald 65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…
Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0
Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…
Votes
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
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