Bioconductor Tmm normalised values

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by benedict.ng ▴ 30

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2.2k

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edgeR tmm normalised values

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by wt215 • 0

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3.7k

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ERCC rna-seq edgeR tmm normalised values

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by what_theheck24 • 0

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2.0k

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edger deseq2 tmm normalised values

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by Saumya001 • 0

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895

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tmm normalised values

8.2 years ago manoharankumar01 • 0

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

GSVA ssGSEA vs. Broad implementation of ssGSEA

Comment: biomaRt server error, and mirrors do not help

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