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tpp
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2
votes
14
replies
2.9k
views
hyperlink issue with a R package
TPP
7.4 years ago
Bioinformatics
▴ 30
2
votes
3
replies
1.2k
views
error using the TTP package
TPP
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Bioinformatics
▴ 30
0
votes
2
replies
1.2k
views
How can I find which proteins are unaffected, stabilized or destabilized and graph them together?
TPP
updated 8.4 years ago by
dchilds
▴ 40 • written 8.4 years ago by
Bioinformatics
▴ 30
1
vote
2
replies
1.3k
views
how to obtain the curve fitting for all proteins
tpp
updated 8.4 years ago by
dchilds
▴ 40 • written 8.4 years ago by
Bioinformatics
▴ 30
2
votes
1
reply
390
views
object 'hdac_targets' not found
TPP
updated 5 months ago by
James W. MacDonald
68k • written 5 months ago by
Alexandre Mahé
• 0
1
vote
1
reply
1.5k
views
what is this error for TPP package
TPP
updated 7.5 years ago by
Pariksheet Nanda
▴ 120 • written 7.5 years ago by
Nemo
▴ 80
0
votes
1
reply
553
views
TPP- data input
TPP
updated 4.9 years ago by
Gordon Smyth
52k • written 4.9 years ago by
esmaeil.dehghan
• 0
0
votes
1
reply
904
views
TPP and NPARC: A problem about the conversion of data frame.
TPP
NPARC
updated 4.3 years ago by
nils.kurzawa
▴ 20 • written 4.3 years ago by
yangwanqi
• 0
0
votes
0
replies
778
views
TPP error message " The names of the data objects in 'data' differ from the names given in the Experiment column of 'configTable'."
software error
TPP
updated 6.1 years ago by
shepherl
4.1k • written 6.1 years ago by
kkim369
• 0
9 results • Page
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Replies
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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