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tpp
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2
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14
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2.6k
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hyperlink issue with a R package
TPP
6.6 years ago
Bioinformatics
▴ 30
2
votes
3
replies
1.0k
views
error using the TTP package
TPP
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Bioinformatics
▴ 30
1
vote
2
replies
1.1k
views
how to obtain the curve fitting for all proteins
tpp
updated 7.6 years ago by
dchilds
▴ 40 • written 7.6 years ago by
Bioinformatics
▴ 30
0
votes
2
replies
1.0k
views
How can I find which proteins are unaffected, stabilized or destabilized and graph them together?
TPP
updated 7.6 years ago by
dchilds
▴ 40 • written 7.6 years ago by
Bioinformatics
▴ 30
1
vote
1
reply
1.3k
views
what is this error for TPP package
TPP
updated 6.6 years ago by
Pariksheet Nanda
▴ 120 • written 6.6 years ago by
Nemo
▴ 80
0
votes
1
reply
375
views
TPP- data input
TPP
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
esmaeil.dehghan
• 0
0
votes
1
reply
690
views
TPP and NPARC: A problem about the conversion of data frame.
TPP
NPARC
updated 3.5 years ago by
nils.kurzawa
▴ 20 • written 3.5 years ago by
yangwanqi
• 0
0
votes
0
replies
627
views
TPP error message " The names of the data objects in 'data' differ from the names given in the Experiment column of 'configTable'."
software error
TPP
updated 5.3 years ago by
shepherl
3.8k • written 5.3 years ago by
kkim369
• 0
8 results • Page
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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