Showing : tracks • reset
2
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3
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2.2k
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ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
9.4 years ago oswaldo.lorenzo ▴ 10
1
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3
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3.7k
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Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 9.0 years ago by ★ 11k • written 9.0 years ago by ▴ 10
0
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2
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1.6k
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ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 9.4 years ago by ▴ 10 • written 9.4 years ago by ▴ 20
0
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2
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2.1k
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x-axis ticks are misaligned in ggbio tracks
ggbio bugs tracks autoplot
11.0 years ago • updated 10.9 years ago cooketho • 0
0
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1
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1.7k
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ggbio tracks issue
ggbio tracks
9.2 years ago longoka • 0
5 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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