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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago
Maria Doyle
▴ 70
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News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago
Maria Doyle
▴ 70
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
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BioCAsia, 5-6th December 2019, Sydney, Australia
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4.9 years ago
Peter Hickey
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BioCAsia, 29-30th November 2018, Melbourne, Australia
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updated 5.4 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Steve Pederson
▴ 170
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LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.2 years ago
mnchoi67
▴ 40
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May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.3 years ago
mnchoi67
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Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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8.2 years ago
Martin Morgan
25k
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Help with neuroblastoma working group
Training
updated 8.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 8.7 years ago by
paul.mineau
▴ 10
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Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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9.2 years ago
Wolfgang Huber
★ 13k
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NGS data analysis training courses at EMBL-EBI
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9.3 years ago
gr231
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Beginner's guide to DESeq2 pdf link broken
deseq2
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updated 9.5 years ago by
Michael Love
41k • written 9.5 years ago by
sunshinne
• 0
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News:
Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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9.5 years ago
Thomas Girke
★ 1.7k
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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