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News: BioCAsia, 29-30th November 2018, Melbourne, Australia
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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8.2 years ago Martin Morgan 25k
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News: BioCAsia, 5-6th December 2019, Sydney, Australia
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4.9 years ago Peter Hickey ▴ 740
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.2 years ago mnchoi67 ▴ 40
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Help with neuroblastoma working group
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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9.5 years ago Thomas Girke ★ 1.7k
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News: NGS data analysis training courses at EMBL-EBI
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.3 years ago mnchoi67 ▴ 40
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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11 months ago Maria Doyle ▴ 70
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Beginner's guide to DESeq2 pdf link broken
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago Maria Doyle ▴ 70
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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11 months ago Maria Doyle ▴ 70
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Job: Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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9.1 years ago Wolfgang Huber ★ 13k
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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