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transcriptr
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Problem installing packages including flowWorkspace
transcriptR
updated 2.8 years ago by
shepherl
3.8k • written 2.8 years ago by
Alice
▴ 10
0
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0
replies
918
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transcriptR predictStrand Error: subscript contains invalid names
transcriptR
predictStrand
4.5 years ago
jason.williams
• 0
1
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4
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1.3k
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transcriptR ChIP-seq RNA-seq bam Error in mergeNamedAtomicVectors
TranscriptR
RNA-seq
ChIP-seq
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
jason.williams
• 0
0
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6
replies
819
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Cannot put file path in for bam file when attempting to construct a TDS in transcriptR
transcriptR
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
jason.williams
• 0
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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