Bioconductor Transcriptr

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transcriptR

updated 3.9 years ago by James W. MacDonald 63k • written 3.9 years ago by jason.williams • 0

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TranscriptR RNA-seq ChIP-seq

updated 3.9 years ago by James W. MacDonald 63k • written 3.9 years ago by jason.williams • 0

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transcriptR

updated 2.3 years ago by shepherl 3.5k • written 2.3 years ago by Alice ▴ 10

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transcriptR predictStrand

3.9 years ago jason.williams • 0

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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…

Answer: ''Model_Matrix'' error by Gordon Smyth 48k

This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…

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Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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